2022

• High-resolution structures and conformational dynamics of RNA origami during folding
  McRae, Rasmussen, Liu, Bøggild, Nguyen, Sampedro Vallina, Boesen, Pedersen, Ren, Geary, Andersen* (ResearchSquare 2022) (in revision)
• Cryo-EM structure and functional landscape of an RNA polymerase ribozyme
  McRae, Wan, Kristoffersen, Hansen, Gianni, Gallego, Curran, Attwater, Holliger*, Andersen* (bioRxiv 2022) (ResearchSquare 2022)

• RNA origami scaffolds as a cryo-EM tool for investigating aptamer-ligand binding of a Broccoli-Pepper FRET pair 
  Sampedro Vallina, McRae, Hansen, Boussebayle, Andersen* (bioRxiv 2022)

• Utilizing RNA origami scaffolds in Saccharomyces cerevisiae for dCas9-mediated transcriptional control 
  Pothoulakis, Nguyen, Andersen* (Nucleic Acid Research 2022)
• Synthetic Translational Regulation by Protein-Binding RNA Origami Scaffolds 
  Nguyen, Pothoulakis, Andersen* (ACS Syn Bio 2022)

2021

• RNA origami design tools enable cotranscriptional folding of kilobase-sized nanoscaffolds
  Geary, Grossi, McRae, Rothemund* & Andersen* (Nature Chemistry 2021) (free SharedIt link)
• Multivalent Aptamer‐Functionalized Single‐Strand RNA Origami as Effective, Target‐Specific Anticoagulants with Corresponding Reversal Agents
  Krissanaprasit, Key, Froehlich, Pontula, Mihalko, Dupont, Andersen, Kjems, Brown & LaBean (Adv. Healthcare Mater. 2021)
• Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET
  Jeng, Trachman, Weissenboek, Troung, Link, Jepsen, Knutson, Andersen, Ferré-D'Amaré & Unrau (RNA 2021)

2007-2020

• Branched Kissing Loops for the Construction of Diverse RNA Homooligomeric Nanostructures
  Liu, Geary, Chen, Shao, Li, Mao, Andersen, Piccirilli, Rothemund & Weizmann, Nature Chemistry 2020

• Out-of-Plane Aptamer Functionalization of RNA Three-Helix Tiles
  Chopra, Sagredo, Grossi, Andersen, Simmel, Nanomaterials 2019

• Genetically Encoded, Functional Single-Strand RNA Origami: Anticoagulant
  Krissanaprasit, Key, Fergione, Froehlich, Pontula, Hart, Carriel, Kjems, Andersen, LaBean, Advanced Materials 2019

• Genus trace reveals the topological complexity and domain structure of biomolecules
  Zajac, Geary, Andersen, Dabrowski-Tumanski, Sulkowska, Sułkowski, Scientific Reports 2018

• An RNA origami octahedron with intrinsic siRNAs for potent gene knockdown
  Høiberg, Sparvath, Andersen, Kjems, Andersen, Biotechnology Journal 2018

• Multifluorophore DNA Origami Beacon as a Biosensing Platform
  Selnihhin, Sparvath, Preus, Birkedal, Andersen, ACS Nano 2018

• Development of a genetically encodable FRET system using fluorescent RNA aptamers
  Jepsen, Sparvath, Nielsen, Langvad, Grossi, Gothelf, Andersen, Nature Communications 2018

• Control of enzyme reactions by a reconfigurable DNA nanovault
  Grossi, Jepsen, Kjems, Andersen, Nature Communications 2017

• Construction of a Polyhedral DNA 12-Arm Junction for Self-Assembly of Wireframe DNA Lattices
  Manuguerra, Grossi, Thomsen, Lyngso, Pedersen, Kjems, Andersen, Gothelf, ACS Nano 2017

• A single-stranded architecture for cotranscriptional folding of RNA nanostructures
  Geary, Rothemund, Andersen, Science 2014

• Hydrogen bond rotations as a uniform structural tool for analyzing protein architecture
  Penner, Andersen, Jensen, Kantcheva, Bublitz, Nissen, Rasmussen, Svane, Hammer, Rezazadegan, Nielsen, Nielsen, Andersen, Nature Communications 2014

• Construction of a 4 Zeptoliters Switchable 3D DNA Box Origami
  Zadegan, Jepsen, Thomsen, Okholm, Schaffert, Andersen, Birkedal, Kjems, ACS Nano 2012

• Site-Specific Chemical Labeling of Long RNA Molecules
  Jahn, Olsen, Nielsen, Tørring, Zadegan, Andersen, Gothelf, Kjems, Bioconjugate Chemistry 2011

• Functional Patterning of DNA Origami by Parallel Enzymatic Modification
  Jahn, Tørring, Voigt, Sørensen, Kodal, Andersen, Gothelf, Kjems, Bioconjugate Chemistry 2011

• A DNA tile actuator with eleven discrete states
  Zhang, Olsen, Kryger, Voigt, Tørring, Gültekin, Nielsen, Zadegan, Andersen, Nielsen, Kjems, Birkedal, Gothelf, Angewandte Chemie (International Edition) 2011

• Self-assembly of a nanoscale DNA box with a controllable lid
  Andersen, Dong, Nielsen, Jahn, Subramani, Mamdouh, Golas, Sander, Stark, Oliveira, Pedersen, Birkedal, Besenbacher, Gothelf, Kjems, Nature 2009

• DNA origami design of dolphin-shaped structures with flexible tails
  Andersen, Dong, Nielsen, Jahn, Lind-Thomsen, Mamdouh, Gothelf, Besenbacher, Kjems, ACS Nano 2008

• Semiautomated improvement of RNA alignments
  Andersen, Lind-Thomsen, Knudsen, Kristensen, Havgaard, Torarinsson, Larsen, Zwieb, Sestoft, Kjems, Gorodkin, RNA 2007

• Enzyme-functionalized DNA nanostructures as tools for organizing and controlling enzymatic reactions
  Grossi, Jaekel, Andersen & Sacca, MRS Bulletin 2017

• RNA nanotechnology - The knots and folds of RNA nanoparticle engineering
  Weizmann & Andersen, MRS Bulletin 2017

• A Visual Review of the Human Pathogen Streptococcus pneumoniae
  Engholm, Kilian, Goodsell, Andersen & Kjærgaard, FEMS Microbiology Reviews 2017

• Single molecule microscopy methods for the study of DNA origami structures
  Birkedal, Dong, Golas, Sander, Andersen, Gothelf, Besenbacher & Kjems, Microscopy Research and Technique 2011

• RNA-Based FRET Sensors for Use In Vivo
  Jepsen & Andersen, Cell Systems Calls 2018

• Biomolecular self-assembly: DNA origami rewired
  Andersen, Nature Nanotechnology 2015

• Nanotechnology: The importance of being modular
  Rothemund & Andersen, Nature 2012

• Design and production of RNA origami as protein scaffolds and biosensors
  Vallina, Geary, Jepsen, Andersen, Methods in Molecular Biology (in press 2022)

• Computer-Aided Design of RNA Origami Structures
  Sparvath, Geary & Andersen, Methods in Molecular Biology 2017

• Visualizing the Bacterium Streptococcus pneumoniae
  Engholm, Goodsell, Kilian, Andersen, Pedersen & Kjærgaard, The Aesthetics of Scientific Data Representation 2017

• Computer-Aided Design of DNA Origami Structures
  Selnihhin & Andersen, Methods in Molecular Biology 2014

• Seeing Streptococcus pneumoniae, a Common Killer Bacteria
  Kjærgaard & Andersen, Electronic Visualisation and the Arts London 2014

• The Art of Editing RNA Structural Alignments
  Andersen, Methods in Molecular Biology 2013

• SCFGs in RNA Secondary Structure Prediction: A Hands-on Approach
  Sükösd, Andersen, Lyngsø, Methods in Molecular Biology 2013
• DNA origami design of 3D nanostructures
  Andersen & Nielsen, Nature Protocol Exchange 2009

• Taking RNA nanotechnology in vivo
  Ane Andreassen, 2018

• Visual Review of the Human Pathogen Streptococcus pneumoniae
  Ditte Høyer Engholm, 2017

• RNA Origami — Developing Cotranscriptionally Folded RNA Nanostructures for in vivo Applications
  Steffen Lynge Sparvath, 2017

• DNA Nanostructures to Control Enzymatic Activities
  Guido Grossi, 2016

• Development of DNA Origami Single Molecule Biosensor
  Denis Selnihhin, 2015

• (Title will be added later)
  Michael Nguyen (Part A - progress report), 2018

• (Title will be added later)
  Mads Jeppesen, 2018

• Stability and Sensing Studies using Co-transcriptional single stranded RNA Origami in Escherichia coli
  Ane Helene Langvad Andreassen (Part A - progress report), 2017

• E. coli as a Biosensor using Fluorescent RNA Aptamers for in vivo Detection
  Maria Færch Jensen, 2017

• Aptamer-based detection of small molecules for DNA origami nanotechnology
  Caroline Filippa Langfeldt Knabe, 2016

• A DNA Origami Nanostructure to Control Enzymatic Activities
  Guido Grossi (Part A - progress report), 2015

• Programming Biosynthetic Pathways using RNA Origami Structures
  Ane Helene Langvad Andreassen, 2015

• RNA Origami Designs: Developing Novel 3D RNA Structures with Multiple Functionalities
  Steffen Lynge Sparvath (Part A - progress report), 2014

• (Title will be added later)
  Jakob Smidt, 2018

• A Broad Range RNA Biosensor for miRNA Detection
  Tenna Vesterman Henriksen, 2016

• A Biosensor Based on Rolling Circle Transcription
  Mads Jeppesen, 2016

• (Title will be added later)
  Peter Loof Møller, 2016

• (Title will be added later)
  Maria Færch Jensen, 2014

• (Title will be added later)
  Christina Moeslund Madsen, 2014

• (Title will be added later)
  Leandro Andrés Escobar-Herrera, 2014

• (Title will be added later)
  Trine Tamberg, 2014

• Cellular Interfacing with Self-assembled Nucleic Acids
  Ane Helene Langvad Andreassen, 2013

• (Title will be added later)
  Caroline Filippa Langfeldt Knabe, 2013

• (Title will be added later)
  Minh Lon Lu, 2013

• Self-Assembly of a Dynamic 3D RNA-DNA Origami Structure Characterized by FRET Studies
  Steffen Lynge Sparvath, 2011