Andersen Lab for Biomolecular Design

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Publications

The main product of our research effort is the presentation of the results in journal articles. In these pages you will find lists of our publications.

Research articles

2022

2021

2007-2020

Review articles

Research commentary

Book chapters

  • Design and production of RNA origami as protein scaffolds and biosensors
    Vallina, Geary, Jepsen, Andersen, Methods in Molecular Biology (in press 2022)

  • Computer-Aided Design of RNA Origami Structures
    Sparvath, Geary & Andersen, Methods in Molecular Biology 2017

PhD theses

  • Taking RNA nanotechnology in vivo
    Ane Andreassen, 2018
  • Visual Review of the Human Pathogen Streptococcus pneumoniae
    Ditte Høyer Engholm, 2017
  • RNA Origami — Developing Cotranscriptionally Folded RNA Nanostructures for in vivo Applications
    Steffen Lynge Sparvath, 2017
  • DNA Nanostructures to Control Enzymatic Activities
    Guido Grossi, 2016
  • Development of DNA Origami Single Molecule Biosensor
    Denis Selnihhin, 2015

Master theses

  • (Title will be added later)
    Michael Nguyen (Part A - progress report), 2018
  • (Title will be added later)
    Mads Jeppesen, 2018
  • Stability and Sensing Studies using Co-transcriptional single stranded RNA Origami in Escherichia coli
    Ane Helene Langvad Andreassen (Part A - progress report), 2017
  • E. coli as a Biosensor using Fluorescent RNA Aptamers for in vivo Detection
    Maria Færch Jensen, 2017
  • Aptamer-based detection of small molecules for DNA origami nanotechnology
    Caroline Filippa Langfeldt Knabe, 2016
  • A DNA Origami Nanostructure to Control Enzymatic Activities
    Guido Grossi (Part A - progress report), 2015
  • Programming Biosynthetic Pathways using RNA Origami Structures
    Ane Helene Langvad Andreassen, 2015
  • RNA Origami Designs: Developing Novel 3D RNA Structures with Multiple Functionalities
    Steffen Lynge Sparvath (Part A - progress report), 2014

Bachelor theses

  • (Title will be added later)
    Jakob Smidt, 2018
  • A Broad Range RNA Biosensor for miRNA Detection
    Tenna Vesterman Henriksen, 2016
  • A Biosensor Based on Rolling Circle Transcription
    Mads Jeppesen, 2016
  • (Title will be added later)
    Peter Loof Møller, 2016
  • (Title will be added later)
    Maria Færch Jensen, 2014
  • (Title will be added later)
    Christina Moeslund Madsen, 2014
  • (Title will be added later)
    Leandro Andrés Escobar-Herrera, 2014
  • (Title will be added later)
    Trine Tamberg, 2014
  • Cellular Interfacing with Self-assembled Nucleic Acids
    Ane Helene Langvad Andreassen, 2013
  • (Title will be added later)
    Caroline Filippa Langfeldt Knabe, 2013
  • (Title will be added later)
    Minh Lon Lu, 2013
  • Self-Assembly of a Dynamic 3D RNA-DNA Origami Structure Characterized by FRET Studies
    Steffen Lynge Sparvath, 2011

Publication news

Research article: Multifluorophore DNA Origami Beacon as a Biosensing Platform

3D model of a Multifluorophore DNA Origami Sensor.
- Publication

Denis Selnihhin has published his work on a Multifluorophore DNA Origami Sensor in ACS Nano.

Research article: Development of a genetically encodable FRET system using fluorescent RNA aptamers

- Publication

Mette D. E. Jepsen and Steffen M. Sparvath have published their work on an RNA aptamer-based FRET system in Nature Communications.

Review article: Enzyme-functionalized DNA nanostructures as tools for organizing and controlling enzymatic reactions

A 3D model of a DNA origami with an encapsulated enzyme.
- Publication

Guido Grossi publishes a review in MRS Bulletin on DNA nanostructures and their use in organizing and controlling enzymes.

Review article: RNA nanotechnology – The knots and folds of RNA nanoparticle engineering

- Publication

Ebbe Sloth Andersen publishes a review in MRS Bulletin on the prospects and difficulties of engineering RNA nanostructures.

Research article: Control of enzyme reactions by a reconfigurable DNA nanovault

- Publication

Guido Grossi paper on the construction of a DNA nanovault to control enzyme activity is finally published in Nature Communications. Congratulations Guido!!!

Review article: A visual review of Streptococcus pneumoniae

- Publication

Ditte Høyer Engholm publishes her visual review of Streptococcus pneumoniae in FEMS Microbiology Reviews.

Book chapter: Visualizing the bacterium Streptococcus pneumoniae

- Publication

Ditte Høyer Engholm has published an article in the book "The Aesthetics of Scientific Data Representation - More than Pretty Pictures” edited by Lotte Philipsen, Rikke Schmidt Kjærgaard.

Research article: Construction of a Polyhedral DNA 12-Arm Junction for Self-Assembly of Wireframe DNA Lattices

- Publication

Ilenia Manuguerra published a work on ACS Nano about design, assembly and characterization of a new DNA motif for self-assembly of DNA wireframe lattices. The work is the result of a collaboration among 4 research groups at iNANO, Aarhus University.

Book chapter: Computer-Aided Design of RNA Origami Structures

Cover of the book "3D DNA Nanostructure".
- Publication

Steffen Sparvath publishes a book chapter describing a tutorial for RNA origami design. The chapter "Computer-Aided Design of RNA Origami Structures" is published in "Methods in Molecular Biology". The book is called "3D DNA Nanostructures" edited by Yonggang Ke and Pengfei Wang.

PhD Thesis: DNA Nanostructures to Control Enzymatic Activities

- Publication

The thesis describes the work of the PhD studies of Guido Grossi.

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Revised 12.07.2022 -
Ebbe Sloth Andersen